HappyDoc Generated Documentation .\DockPrep

/ . / DockPrep 

Functions   
  terminiiFromSeqres  
terminiiFromSeqres ( mol,  sr )
Exceptions   

TerminiiError( "Can't get mol seqs" )
TerminiiError( "No SEQRES for chain %s" % chainID )
TerminiiError( "Sequence longer than SEQRES!" " (chain %s)" % chainID )

  guessTerminii  
guessTerminii ( mol )
  completeTerminalCarboxylate  
completeTerminalCarboxylate ( cter )
  prep  
prep (
        mols,
        addHFunc=AddH.simpleAddHydrogens,
        hisScheme=None,
        mutateMSE=True,
        delSolvent=True,
        delIons=False,
        delLigands=False,
        delAltLocs=True,
        incompleteSideChains="gly/ala",
        nogui=False,
        **kw,
        )

To get H-bond-guided hydrogens, you would set addHFunc to AddH.hbondAddHydrogens

  determineTerminii  
determineTerminii ( mols )
Classes   

TerminiiError
Python files   

ChimeraExtension.py

gui.py
This document was automatically generated Thu Nov 09 13:33:36 2006 by HappyDoc version 3.0.a1